rs33721364 SNP Detail

Summary

• ID
  rs33721364
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr17:48039638 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        CAGACTGGCA GAGAGACTGA GACACACGGA CAGAGCTAGG
  AGACACACAG AGAGAGAGAG GTATGGAAGG AGAAAGGGAA GAAAGAAGAA GGCAGGGCCC
  R
  GGCCTGACAC ATCCACCGCC TTCCACAGGG TCCCCCTGAA GAAAATGAAG AGTATCCGGG
  AGACCATGAA GGAACAAGGT GTCCTCAAAG ACTTTCTGA                       
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
ss39570012	mCV25139985	ABI	CRAMUS_MOUSE	f	SNP	G	A	A
ss325406543	CHEV_17_47865662	CHEVERUD	SCREENING_POP	f	SNP				G	A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
rs33721364					SNP	G	A	A	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr17:48039638 () rs orientation: forward

Symbol	Name	Function Class
D17Mit201	DNA segment, Chr 17, Massachusetts Institute of Technology 201	1378 bp distal
Pgc	progastricsin (pepsinogen C)	Intron
Rr528106	regulatory region 528106	1996 bp proximal
Tssr5147	transcription start site region 5147	37 bp upstream
Tssr5148	transcription start site region 5148	597 bp downstream
Tssr145003	transcription start site region 145003	1865 bp downstream
Tssr145004	transcription start site region 145004	19 bp upstream
Tssr145005	transcription start site region 145005	47 bp upstream
Tssr145006	transcription start site region 145006	56 bp upstream
Tssr145007	transcription start site region 145007	83 bp upstream
Tssr145008	transcription start site region 145008	117 bp upstream
Tssr145009	transcription start site region 145009	134 bp upstream
Tssr145010	transcription start site region 145010	537 bp upstream
Tssr145011	transcription start site region 145011	550 bp upstream
Tssr145012	transcription start site region 145012	562 bp upstream
Tssr145013	transcription start site region 145013	581 bp upstream
Tssr145014	transcription start site region 145014	1367 bp upstream
Tssr145015	transcription start site region 145015	1429 bp upstream
Tssr145016	transcription start site region 145016	1440 bp upstream
Tssr145017	transcription start site region 145017	1885 bp upstream
Tssr145018	transcription start site region 145018	1897 bp upstream
Tssr145019	transcription start site region 145019	1928 bp upstream
Tssr145020	transcription start site region 145020	1949 bp upstream
Tssr145021	transcription start site region 145021	1975 bp upstream
Tssr148459	transcription start site region 148459	83 bp downstream
Tssr148460	transcription start site region 148460	104 bp downstream
Tssr148461	transcription start site region 148461	143 bp downstream
Tssr148462	transcription start site region 148462	162 bp downstream
Tssr148463	transcription start site region 148463	565 bp downstream
Tssr148464	transcription start site region 148464	643 bp downstream
Tssr148465	transcription start site region 148465	1408 bp downstream
Tssr148466	transcription start site region 148466	1421 bp downstream
Tssr148467	transcription start site region 148467	1916 bp downstream
Tssr148468	transcription start site region 148468	1947 bp downstream