rs33722026 SNP Detail

Summary

• ID
  rs33722026
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:86763037 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GATGCTCGGG GATCGCCGCG
  GGCGTGGGCC TGGGGAGAGG GAGGGCTGTG AAGGCCGAGG CAAGGGCGGC AGCGTGCGCT
  GCCAACAGAG CCCAGCCCCT TCTCCTAAGA AGCGTGCCTG TGACTAGCTG GCCTGTCCTC
  GGCAGTAGAG GCCCAGATGG GCAGGGCGAT TTGAAATGTC AGATTCTGTG GCCACGCGAC
  Y
  GTTACCTGTG CACCCTCAGC TCCTTGAGGC TGCTCCACTA GTCTCAGTTA CAACGGGGAG
  CCGAGTGGGC AGGTAATTCG AGCCGCTTTA GCCTTAAAGC AATACTGAGG TATGCGGTAT
  AGACAAGTAG CAAAGCAATT AGCTGAATGC CAGATTACAC TCGTCTTGTA ATCATTTGCA
  CCCTTAAACT GTAATTTTTG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss46310632	mCV24288059	ABI	CRAMUS_MOUSE	f	SNP		T	C		C	C
ss61436634	NES16820189	PERLEGEN	MM_PANEL2	f	SNP	T		C	C
ss136762478	ENSMUSSNP4879321	ENSEMBL	ENSEMBL_Sanger	f	SNP		T	C			C
ss323058455	CHEV_9_86775819	CHEVERUD	SCREENING_POP	f	SNP							T	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs33722026					SNP	T	T	C	C	C	C	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss61436634	NES16820189	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:86763037 () rs orientation: forward

Symbol	Name	Function Class
Cpgi22106	CpG island 22106	within coordinates
Rr684153	regulatory region 684153	581 bp distal
Rr684154	regulatory region 684154	45 bp distal
Snap91	synaptosomal-associated protein 91	330 bp upstream
Tssr90794	transcription start site region 90794	612 bp upstream
Tssr90795	transcription start site region 90795	572 bp upstream
Tssr90796	transcription start site region 90796	517 bp upstream
Tssr90797	transcription start site region 90797	500 bp upstream
Tssr90798	transcription start site region 90798	482 bp upstream
Tssr90799	transcription start site region 90799	325 bp upstream
Tssr90800	transcription start site region 90800	272 bp upstream