rs33724099 SNP Detail

Summary

• ID
  rs33724099
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr5:30807148 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCCTAATGTT GAGAGTGGCT
  AATGTCTGTC CAGGCTGCTG TCCCCAGGAA GAATCCAAAT GGTCATTTAC TGCTTAGATA
  AACCATGCTG ACTCAGCCCT TCCTTTGAAA ACCTCCAAAC CGGTTAGGTA AGAAGCCAAG
  GAAGCCTCGG TCCCAGGAAG CCCCACCCTT TGAGGCTGCT GGAGAGTCAG GAGGACTCCG
  R
  AGTGTCTTAA CCTTTGATCC TGTCCTTAGC CCATCACCTT TTGTGTGGCC TCTCAGGAGC
  CTCAGCCCCA AGTCCTGAGA TGGGGCCCAG AGCTGGACTG TAAACATTGT TCTGGAGTAA
  ACAGTGAGAA AGACACTCTG GGAGGAAGAA CGTTGGTGGG AGCAACCACC TTACCAGGAT
  GGTATTGGCA TTGCTGGCCA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	DBA/2J
ss45813949	mCV25292940	ABI	CRAMUS_MOUSE	f	SNP	G	A	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	DBA/2J
rs33724099					SNP	G	A	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:30807148 () rs orientation: forward

Symbol	Name	Function Class
Cpgi15682	CpG island 15682	1435 bp distal
Mir5625	microRNA 5625	1789 bp downstream
Rr609028	regulatory region 609028	1853 bp distal
Rr609029	regulatory region 609029	within coordinates
Rr609030	regulatory region 609030	924 bp proximal
Slc35f6	solute carrier family 35, member F6	within coordinates
Tssr45603	transcription start site region 45603	1872 bp downstream
Tssr45604	transcription start site region 45604	1806 bp downstream
Tssr45605	transcription start site region 45605	1775 bp downstream