rs33724108 SNP Detail

Summary

• ID
  rs33724108
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:30282559 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GTGCGTGGCG TCTCCCCGGC
  GTGATAGGTC AGGACCACCG CCCCCCTTGC TCCCCATTGG CTGCTCTGCG AAGCCCGGTC
  TCCGGGTAAG ATGGCAGCGG ACGGACAGTG CTCGCTCCCC GCTTCATGGC GGCCAGTGAC
  CCTCACCCAC GTCGAATACC CTGCAGGTAA GAGCCTGCCC CGGCTCCGAG GACGTTCTCC
  Y
  CGAGCTGCCG CCACAGCCCC GGGCGTTCCG GGCCGCGCGG ACCGCCTTCG GGGCGCCTTG
  GAACCGCGGT GGGAACTGTC AAACAGCGAG CCTTGGAGGG GCTCGGCCGG CGCGCGCGCC
  GCGCAGGCGC AGTGAGGCGG CGATGAGCAG GGAGAAATTG CGAGCGGCTC GCTCGTGTGC
  TCTGCGGCTG CGCGGCCGAG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J
ss45313551	mCV23155810	ABI	CRAMUS_MOUSE	f	SNP	C	T	T	T
ss146398543	ENSMUSSNP4334106	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	T		T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J
rs33724108					SNP	C	T	T	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:30282559 () rs orientation: forward

Symbol	Name	Function Class
Cpgi11435	CpG island 11435	within coordinates
Dolpp1	dolichyl pyrophosphate phosphatase 1	within coordinates
Gm75227	predicted gene, 75227	154 bp upstream
Rr396863	regulatory region 396863	60 bp downstream
Rr554304	regulatory region 554304	283 bp distal
Rr554305	regulatory region 554305	165 bp distal
Rr554306	regulatory region 554306	121 bp distal
Rr554307	regulatory region 554307	within coordinates
Tssr17111	transcription start site region 17111	242 bp downstream
Tssr17112	transcription start site region 17112	107 bp downstream
Tssr17113	transcription start site region 17113	89 bp downstream