rs33727362 SNP Detail

Summary

• ID
  rs33727362
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  132
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr5:112417786 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                                                   
  GACTCTTGGT CGTAGTCACA ACCGGAACAA CCAACCAACC AACCATAAAC TCCGCAATTA
  CTACAAAGAT CGGTTTCTTC CGAGGGGGGG GGTGGGAGAT GGGGGGTCAC ATATCCCAAG
  CTGACCTCGA GCTTTGGTGT ATAGTCAAGT TGGAGCTCCA CATTCGCTGT GTAGCAGAAG
  ATGACCTTAA ATTTCTGAGC CAAATTCTTC TTATGAACCC ACTGAGTTTA TTTGGGGCTA
  GGGATTGAAA CCAGGGCTTT GAGCAAGCTA GGTAAGAGTT CCACTAACTA AGTTTCACAC
  M
  CCCCCCCAGC CCATCTGTTT GTTTGACTCC TTTATCTTTT GTTTTGTTTT GTTTTGTTTT
  CGAGACAGGG TTTCTCTGTG TATCCCTGGC TGTCCTGGAA CTCACTCTGT AGACCAGGCT
  GGCCTTGAAT TCAGAAATCT GCCTGCCTCT GCCTCCCAAG TTTTTGGATT AAAGGTGTGT
  GCCACCACTG CCCGGCTTGC TTTATCTATT AAGACATGGT CTGCAGGCTG TCGGAGATGA
  CTTGGCAGTA AAGAGTAGCC CTGCCAGAGG ACCTGGGTTC AATGCCCGGC TCCCACGTGG
                                                                   
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	DBA/2J
ss45814494	mCV24791750	ABI	CRAMUS_MOUSE	f	SNP	A	C
ss149079778	ENSMUSSNP3339577	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	C
SNP Consensus Information
SNP					Consensus Type	A/J	DBA/2J
rs33727362					SNP	A	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:112417786 () rs orientation: forward

Symbol	Name	Function Class
Cpgi16256	CpG island 16256	387 bp distal
Cpgi16257	CpG island 16257	1265 bp proximal
Crybb1	crystallin, beta B1	335 bp downstream
Gm46941	predicted gene, 46941	801 bp downstream
Tssr47980	transcription start site region 47980	602 bp downstream
Tssr47981	transcription start site region 47981	456 bp downstream
Tssr47982	transcription start site region 47982	438 bp downstream
Tssr47983	transcription start site region 47983	424 bp downstream
Tssr47984	transcription start site region 47984	414 bp downstream
Tssr47985	transcription start site region 47985	375 bp downstream
Tssr52561	transcription start site region 52561	403 bp upstream
Tssr52562	transcription start site region 52562	369 bp upstream