rs33727979 SNP Detail

Summary

• ID
  rs33727979
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:90352683 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        AAATATAATG GCAAGAGCTC ACACAACTAG CAAATAAATG
  TCAAAGTCAG GATTTGAACT TGCTTCTTAT ACATTTTTGG CAGAAATAAA TTAAGTATAT
  R
  CAATAAAGCG AACACGTGTG CTTCTGCCTG CTATTTCAAA TGTTAAAATT ACACACAGAA
  TTCAGGGCAC CTCCCCAACT CACAAAGCTC CCTTTGAGG                       
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss45314310	mCV25136612	ABI	CRAMUS_MOUSE	f	SNP	G	A	G	A
ss146919964	ENSMUSSNP4499686	ENSEMBL	ENSEMBL_Sanger	f	SNP		A		A
ss320390848	CHEV_2_90362496	CHEVERUD	SCREENING_POP	f	SNP					G	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs33727979					SNP	G	A	G	A	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:90352683 () rs orientation: forward

Symbol	Name	Function Class
2310079F09Rik	RIKEN cDNA 2310079F09 gene	within coordinates
Ptprj	protein tyrosine phosphatase receptor type J	Intron
Rr560519	regulatory region 560519	180 bp proximal
Tssr25101	transcription start site region 25101	770 bp downstream