TTGGG ATGGAGGGTT GGCTTTGTGG Y TAAGAGCACT TGGTTGCTGT TTCAC Y = C/T Note: Sequence in lower case indicates low-complexity or repetitive sequence |
Assay ID | Submitter SNP ID |
Submitter Handle |
Population | ss orientation |
Variation Type | 129S1/SvImJ |
129X1/SvJ |
A/J |
DBA/2J |
LG/J |
SM/J |
---|---|---|---|---|---|---|---|---|---|---|---|
ss46311401 | mCV23664563 | ABI | CRAMUS_MOUSE | f | SNP | C | C | C | T | ||
ss136756096 | ENSMUSSNP1960590 | ENSEMBL | ENSEMBL_Sanger | f | SNP | C | C | T | |||
ss323056345 | CHEV_9_86360091 | CHEVERUD | SCREENING_POP | f | SNP | C | T | ||||
SNP Consensus Information | |||||||||||
SNP | Consensus Type | 129S1/SvImJ |
129X1/SvJ |
A/J |
DBA/2J |
LG/J |
SM/J |
||||
rs33728757 | SNP | C | C | C | T | C | T |
Location: Chr9:86348537 () rs orientation: forward | ||||||||
Symbol | Name | Transcript | Protein | Function Class |
Allele | Residue | Codon Position |
AA Position |
---|---|---|---|---|---|---|---|---|
Cpgi22101 | CpG island 22101 | 1367 bp distal | ||||||
Cpgi22102 | CpG island 22102 | 433 bp proximal | ||||||
Dop1a | DOP1 leucine zipper like protein A | 657 bp upstream | ||||||
Rr684095 | regulatory region 684095 | 1545 bp distal | ||||||
Rr684096 | regulatory region 684096 | 1044 bp distal | ||||||
Rr684097 | regulatory region 684097 | 1505 bp distal | ||||||
Rr684098 | regulatory region 684098 | 180 bp proximal | ||||||
Rr684099 | regulatory region 684099 | 597 bp proximal | ||||||
Rr684100 | regulatory region 684100 | 681 bp proximal | ||||||
Tssr2956 | transcription start site region 2956 | 1475 bp upstream | ||||||
Tssr86391 | transcription start site region 86391 | 679 bp upstream | ||||||
Tssr86392 | transcription start site region 86392 | 689 bp upstream | ||||||
Tssr86393 | transcription start site region 86393 | 740 bp upstream | ||||||
Tssr90780 | transcription start site region 90780 | 1541 bp upstream | ||||||
Tssr90781 | transcription start site region 90781 | 1526 bp upstream | ||||||
Ube3d | ubiquitin protein ligase E3D | 1534 bp upstream |
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO) |
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last database update 12/17/2024 MGI 6.24 |
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