rs33730478 SNP Detail

Summary

• ID
  rs33730478
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:6167257 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ATGTGTGTCT TCAGGTACTT
  CGCTGACTGT ACCATCGCCT GTGAGCCTAC TTTCTATGTT GCTTCTCTGT GTCTTTCTCC
  AGGGCAGATT ATATACTTAA ACAGTATAAA CAGATTTTTT TTTCTTCAAG GGGATTCAAA
  TTTTTCAATT GTCGGTCACA TCAATAGCAT GTACTTTCTT ATGCATCAGC CCATAAAACA
  R
  TGATATCCAT AAAGCAAGAA CGTCTTACAT GAACTTGATC GAGAACTAAG AGGGCACTAC
  ATTCCATTTT ACTCACTCAG AAATAGTGCT GAAATGAAGT TACCCACATG TATATCCTCT
  TCAGTGCTGG GTGGTAGAGT AACTTGTAAA GTCTGTATTG TCATAACCCC CTCCCTTCTC
  AGCCACTTCT AATGAATGAA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss46311146	mCV22333221	ABI	CRAMUS_MOUSE	f	SNP		A	G					G		G
ss50640677	NES14035664	PERLEGEN	MM_PANEL2	f	SNP	A		G	A	G	G	G		A	G	G	G	A	G	G	A	G
ss136187906	ENSMUSSNP1586646	ENSEMBL	ENSEMBL_Sanger	f	SNP		A	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs33730478					SNP	A	A	G	A	G	G	G	G	A	G	G	G	A	G	G	A	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss50640677	NES14035664	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:6167257 () rs orientation: forward

Symbol	Name	Function Class
Cpgi21338	CpG island 21338	1143 bp proximal
Pdgfd	platelet-derived growth factor, D polypeptide	1327 bp upstream
Tssr2757	transcription start site region 2757	1421 bp upstream
Tssr83664	transcription start site region 83664	1192 bp upstream
Tssr83665	transcription start site region 83665	1213 bp upstream
Tssr83666	transcription start site region 83666	1296 bp upstream
Tssr83667	transcription start site region 83667	1313 bp upstream
Tssr83668	transcription start site region 83668	1344 bp upstream
Tssr83669	transcription start site region 83669	1381 bp upstream