rs33731179 SNP Detail

Summary

• ID
  rs33731179
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:106887690 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCGCCAGTCG TGCCAGCAAG
  TAACTGAGAT CTGCCCAGGA TCCAAGGTCA AAGGAAGCTG ATGGACCACG CAGTGGCCAG
  CATGGCAAAC TCCTTACAGA ACTTACCAGG TTTCTCTTAG TAAGTACCTA GTAAATAAGT
  GTTGAATTGC ATTGCTGTAG TAATTTCAAT AAAGACAGAT TATTCATGCA CTATCATGCT
  Y
  CATACAATGT GACAGAACTT AGAGAAGCCA GCCTTATGTA ATTTGGAGCT TGGTATAAAA
  ATGCTGCCTT AACAAACATC CACTGTACTG GTTAATGTCT TCCTTAATTT GGCTCAAGCT
  GAAGTTGTCT GGGAAGAAGG AATTGAGAAA ATGTTAGATT GGCTACAAGC AGCTCTATGG
  GCCATTTTCT TGATTAGTGA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
ss46849927	NES10705400	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	T	T	T	T	T	C	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
rs33731179					SNP	T	T	T	T	T	T	T	T	T	T	T	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46849927	NES10705400	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:106887690 () rs orientation: forward

Symbol	Name	Function Class
Gm27008	predicted gene, 27008	within coordinates
Rr582879	regulatory region 582879	1295 bp distal
Rr582880	regulatory region 582880	931 bp proximal
Rr582881	regulatory region 582881	1036 bp proximal