GCCCACCAGC CCGCCAGTGG GGAAGATCGG CTCCAGGCTG CGCTGGCGTC TGAGACCGGA CGGGAGGGGC TGAGGTCACC TTCGCTGGGC TTTAGAGCTG Y GGGTAGAGGC GTCCGGGTTC TTCCTGACCT CCTGGCGCTA ATTGCAGGGG CCGAAGGGCG TGCTTGGGCA CAGGCAGGGG TCGTGACCCT GCAGTCAGC Y = C/T Note: Sequence in lower case indicates low-complexity or repetitive sequence |
Assay ID | Submitter SNP ID |
Submitter Handle |
Population | ss orientation |
Variation Type | 129S1/SvImJ |
129X1/SvJ |
A/J |
AKR/J |
BTBR T<+> Itpr3 |
C3H/HeJ |
C57BL/6J |
CAST/EiJ |
DBA/2J |
FVB/NJ |
KK/HlJ |
LG/J |
NZW/LacJ |
SM/J |
WSB/EiJ |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
ss45815238 | mCV24632693 | ABI | CRAMUS_MOUSE | f | SNP | C | C | T | ||||||||||||
ss61463920 | NES16583243 | PERLEGEN | MM_PANEL2 | f | SNP | C | C | T | T | T | C | C | T | T | T | T | ||||
ss149174111 | ENSMUSSNP6928661 | ENSEMBL | ENSEMBL_Sanger | f | SNP | C | C | |||||||||||||
ss321666002 | CHEV_5_120137253 | CHEVERUD | SCREENING_POP | f | SNP | T | C | |||||||||||||
SNP Consensus Information | ||||||||||||||||||||
SNP | Consensus Type | 129S1/SvImJ |
129X1/SvJ |
A/J |
AKR/J |
BTBR T<+> Itpr3 |
C3H/HeJ |
C57BL/6J |
CAST/EiJ |
DBA/2J |
FVB/NJ |
KK/HlJ |
LG/J |
NZW/LacJ |
SM/J |
WSB/EiJ |
||||
rs33732239 | SNP | C | C | C | T | T | T | T | C | C | T | T | T | T | C | T |
Assay ID | Submitter SNP ID |
Submitter Handle |
Population | ss orientation |
Variation Type |
Alleles |
---|---|---|---|---|---|---|
ss61463920 | NES16583243 | PERLEGEN | MM_PANEL | f | SNP | C/T |
Location: Chr5:119825309 () rs orientation: forward | ||||||||
Symbol | Name | Transcript | Protein | Function Class |
Allele | Residue | Codon Position |
AA Position |
---|---|---|---|---|---|---|---|---|
Cpgi16460 | CpG island 16460 | within coordinates | ||||||
Cpgi16461 | CpG island 16461 | 644 bp proximal | ||||||
Gm71505 | predicted gene, 71505 | 920 bp upstream | ||||||
Rr619145 | regulatory region 619145 | 656 bp distal | ||||||
Rr619146 | regulatory region 619146 | 745 bp distal | ||||||
Rr619147 | regulatory region 619147 | 155 bp distal | ||||||
Rr619148 | regulatory region 619148 | 430 bp proximal | ||||||
Rr619149 | regulatory region 619149 | 931 bp proximal | ||||||
Tbx3os2 | T-box 3, opposite strand 2 | within coordinates | ||||||
Tssr48472 | transcription start site region 48472 | 379 bp downstream |
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO) |
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last database update 12/17/2024 MGI 6.24 |
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