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rs33732239 SNP Detail
Summary
  • ID
    rs33732239
  • Variation Type
    SNP
  • Alleles
    C/T
Genome Location and Flanking Sequence
  • Location
    Chr5:119825309 (GRCm39)
  • SNP Orientation to the Genome
    forward
  • SNP Reference Flanking Sequence
                          GCCCACCAGC CCGCCAGTGG GGAAGATCGG CTCCAGGCTG
    CGCTGGCGTC TGAGACCGGA CGGGAGGGGC TGAGGTCACC TTCGCTGGGC TTTAGAGCTG
    Y
    GGGTAGAGGC GTCCGGGTTC TTCCTGACCT CCTGGCGCTA ATTGCAGGGG CCGAAGGGCG
    TGCTTGGGCA CAGGCAGGGG TCGTGACCCT GCAGTCAGC                       
    
    Y = C/T
    

    Note: Sequence in lower case indicates low-complexity or repetitive sequence
    BLAST SNP flanking sequence against the mouse Genome
SNP Assays
and
SNP Consensus
Strain alleles of submitted assays, and consensus values for this SNP
Legend
Assay ID Submitter
SNP ID
Submitter
Handle
Population
ss orientation
Variation Type
129S1/SvImJ
129X1/SvJ
A/J
AKR/J
BTBR T<+> Itpr3/J
C3H/HeJ
C57BL/6J
CAST/EiJ
DBA/2J
FVB/NJ
KK/HlJ
LG/J
NZW/LacJ
SM/J
WSB/EiJ
ss45815238 mCV24632693 ABI CRAMUS_MOUSE f SNP C C T
ss61463920 NES16583243 PERLEGEN MM_PANEL2 f SNP C C T T T C C T T T T
ss149174111 ENSMUSSNP6928661 ENSEMBL ENSEMBL_Sanger f SNP C C
ss321666002 CHEV_5_120137253 CHEVERUD SCREENING_POP f SNP T C
SNP Consensus Information
SNP Consensus Type
129S1/SvImJ
129X1/SvJ
A/J
AKR/J
BTBR T<+> Itpr3/J
C3H/HeJ
C57BL/6J
CAST/EiJ
DBA/2J
FVB/NJ
KK/HlJ
LG/J
NZW/LacJ
SM/J
WSB/EiJ
rs33732239 SNP C C C T T T T C C T T T T C T
Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter
Assay ID Submitter
SNP ID
Submitter
Handle
Population
ss orientation
Variation
Type
Alleles
ss61463920 NES16583243 PERLEGEN MM_PANEL f SNP C/T
Gene/Marker
Associations
and
Function
Classes
MGI genes/markers associated with the SNP
Location: Chr5:119825309 () rs orientation: forward
Symbol Name Transcript Protein Function
Class
Allele Residue Codon
Position
AA
Position
Cpgi16460 CpG island 16460 within coordinates
Cpgi16461 CpG island 16461 644 bp proximal
Gm71505 predicted gene, 71505 920 bp upstream
Rr619145 regulatory region 619145 656 bp distal
Rr619146 regulatory region 619146 745 bp distal
Rr619147 regulatory region 619147 155 bp distal
Rr619148 regulatory region 619148 430 bp proximal
Rr619149 regulatory region 619149 931 bp proximal
Tbx3os2 T-box 3, opposite strand 2 within coordinates
Tssr48472 transcription start site region 48472 379 bp downstream

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
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last database update
12/17/2024
MGI 6.24
The Jackson Laboratory