rs33732239 SNP Detail

Summary

• ID
  rs33732239
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr5:119825309 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        GCCCACCAGC CCGCCAGTGG GGAAGATCGG CTCCAGGCTG
  CGCTGGCGTC TGAGACCGGA CGGGAGGGGC TGAGGTCACC TTCGCTGGGC TTTAGAGCTG
  Y
  GGGTAGAGGC GTCCGGGTTC TTCCTGACCT CCTGGCGCTA ATTGCAGGGG CCGAAGGGCG
  TGCTTGGGCA CAGGCAGGGG TCGTGACCCT GCAGTCAGC                       
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	NZW/LacJ	SM/J	WSB/EiJ
ss45815238	mCV24632693	ABI	CRAMUS_MOUSE	f	SNP		C	C				T
ss61463920	NES16583243	PERLEGEN	MM_PANEL2	f	SNP	C		C	T	T	T		C	C	T	T		T		T
ss149174111	ENSMUSSNP6928661	ENSEMBL	ENSEMBL_Sanger	f	SNP		C	C
ss321666002	CHEV_5_120137253	CHEVERUD	SCREENING_POP	f	SNP												T		C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	NZW/LacJ	SM/J	WSB/EiJ
rs33732239					SNP	C	C	C	T	T	T	T	C	C	T	T	T	T	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss61463920	NES16583243	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:119825309 () rs orientation: forward

Symbol	Name	Function Class
Cpgi16460	CpG island 16460	within coordinates
Cpgi16461	CpG island 16461	644 bp proximal
Gm71505	predicted gene, 71505	920 bp upstream
Rr619145	regulatory region 619145	656 bp distal
Rr619146	regulatory region 619146	745 bp distal
Rr619147	regulatory region 619147	155 bp distal
Rr619148	regulatory region 619148	430 bp proximal
Rr619149	regulatory region 619149	931 bp proximal
Tbx3os2	T-box 3, opposite strand 2	within coordinates
Tssr48472	transcription start site region 48472	379 bp downstream