rs33732282 SNP Detail

Summary

• ID
  rs33732282
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  132
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr5:24549375 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                                                   
  AGTCAGGGTA CAGCACAGAG CAAATGTGGA GACACAACAC ACTGGGGAGC TGGTCTGGAC
  CGAAGGTCCC AACCCCTCCC CCCAAGCCAC AGCATCAGCT GTAGCAGTGG GGACCCTCTG
  ACCTTGTTGC CATGGCAACT GGCCTACAGC TGGAGTGGAG AAGCCAATAG ATTCTTCTCT
  AGAGACAACC TCATCTCCAC CCACACACAG GCTCCTGGGG ACACAGGGAC AGAGAGACAG
  GGCCAGGACA GTTAGAAGTA TGGTAAGACA GATAAGCCTT TGAGACAAAG GCCTGGGGGA
  Y
  GGGGGGGGTG AGTAGACAGC ATACAGGAGA CACAGAAAGA AGCAAAAATT TGGTTCCAGG
  ATGCTGAAGG ATCAGAAGAA AGACAAAAGG AGAAGGAGGC AAAAATGGAA GGGACAGAAG
  CAGGCAGGCA GGTCTGAGAC AAAGGCAGGG AGGCCTGAGT GTGGGGAGCA AGAGCTGCCA
  AGAGGAGGGG GGCACAGCAG GCAGGAAGGG AGGCAGCAGG GAGGTGGGGA CAAAGAGCAA
  AGACAATAGC GACAATAGCG GGACCAGGAA GAGGAAGAGC TAGATCTCCC CCACCCCCAC
                                                                   
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J
ss45814944	mCV25227509	ABI	CRAMUS_MOUSE	f	SNP	C	C	T
ss148091796	ENSMUSSNP2059952	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	C	T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J
rs33732282					SNP	C	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:24549375 () rs orientation: forward

Symbol	Name	Function Class
Gm71601	predicted gene, 71601	within coordinates
Kcnh2	potassium voltage-gated channel, subfamily H (eag-related), member 2	within coordinates
Tssr50307	transcription start site region 50307	152 bp downstream
Tssr50308	transcription start site region 50308	173 bp downstream
Tssr50309	transcription start site region 50309	195 bp downstream