rs33733824 SNP Detail

Summary

• ID
  rs33733824
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr5:24714778 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        CGGGCTGGAG CAAGCAGGAA CTGAGTGAAA CGGGGTTGAC
  CGAAGCAAGC AGAGGTCCTA AAATTCAATT CCCAACAACC ACATGAAGGC TCACAACTAT
  S
  TGTACAGCTA CAGTGTACTC ACATACATAA AATAACTAAA TAAATCTTTT AAAAATAGAT
  ACTTAACATA GTAAAACGGC TATTTCCAGC ATGTGCATG                       
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss45814566	mCV22685927	ABI	CRAMUS_MOUSE	f	SNP	C	G	G	C
ss148095135	ENSMUSSNP5735817	ENSEMBL	ENSEMBL_Sanger	f	SNP		G		C
ss321495917	CHEV_5_24015598	CHEVERUD	SCREENING_POP	f	SNP					C	G
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs33733824					SNP	C	G	G	C	C	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:24714778 () rs orientation: forward

Symbol	Name	Function Class
Gbx1	gastrulation brain homeobox 1	Intron
Rr608340	regulatory region 608340	1169 bp distal
Rr608341	regulatory region 608341	964 bp proximal
Rr608342	regulatory region 608342	1037 bp proximal
Rr608343	regulatory region 608343	1217 bp proximal