rs33737861 SNP Detail

Summary

• ID
  rs33737861
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:25778568 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        AGGTGAGGCT ATGGCTCCAA GTCCCCTAAA TCGAATCCCA
  TGAGTGAAGT GGCCTTGGGA AATCCCCAGT ACCCCAGGCC CCTGCACCCC CAAGCCTCTG
  Y
  ACTGTAAGTC TCAGTGCTTT ATCAGTGGTC AGGTGGATCT GGCGGGGGAA GGTTGGTACA
  GATACACCTG TCCTCTGCAT CTGGAATACA AGTGAGAGA                       
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J
ss45314880	mCV23192810	ABI	CRAMUS_MOUSE	f	SNP	C	C	T	C	T
ss146381012	ENSMUSSNP2584389	ENSEMBL	ENSEMBL_Sanger	f	SNP		C	T		T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J
rs33737861					SNP	C	C	T	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:25778568 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Kcnt1	potassium channel, subfamily T, member 1			Intron
				Noncoding-Transcript-Variant
Rr553168	regulatory region 553168			980 bp distal
Rr553169	regulatory region 553169			184 bp distal
Tssr16777	transcription start site region 16777			659 bp upstream