rs33739353 SNP Detail

Summary

• ID
  rs33739353
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:41494759 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GGCAG CATTTGGTGG AATGTGCTTC
  R
  AAGCTTACAG TTCTGTAAGT GATTG                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss46313037	mCV23037810	ABI	CRAMUS_MOUSE	f	SNP	G	G	A	G
ss136358681	ENSMUSSNP3623842	ENSEMBL	ENSEMBL_Sanger	f	SNP		G		G
ss322927332	CHEV_9_41391546	CHEVERUD	SCREENING_POP	f	SNP					G	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs33739353					SNP	G	G	A	G	G	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:41494759 () rs orientation: forward

Symbol	Name	Function Class
Gm28119	predicted gene 28119	611 bp downstream
Gm69589	predicted gene, 69589	within coordinates
Mir100hg	Mir100 Mirlet7a-2 Mir125b-1 cluster host gene	within coordinates
Mir125b-1	microRNA 125b-1	1461 bp downstream
Rr677063	regulatory region 677063	1998 bp distal
Rr677064	regulatory region 677064	1850 bp distal
Rr677065	regulatory region 677065	1451 bp distal
Rr677066	regulatory region 677066	1324 bp distal
Rr677067	regulatory region 677067	743 bp distal
Rr677068	regulatory region 677068	within coordinates
Rr677069	regulatory region 677069	1325 bp proximal
Tssr84527	transcription start site region 84527	1459 bp downstream
Tssr84528	transcription start site region 84528	421 bp downstream
Tssr84529	transcription start site region 84529	948 bp upstream
Tssr84530	transcription start site region 84530	1928 bp upstream