rs33739429 SNP Detail

Summary

• ID
  rs33739429
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr5:115470738 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGGAGGTGAC AATGCCAGGC
  ACACAGTGAG TGCCAGGGCT GGGCTTTGCT CGTGCCTCTG GGTCTTCACT CTTCCCTTCT
  GTTTGTTTGG ATTTCAGGGT GAGACTTCCT ACATCCGAGT GTATCCTGAG AGAAGCACCA
  GCTATGGCTA CTCACGGTCG CGGTCTGGGT CCAGGGGCCG CGACTCGCCA TACCAAAGCC
  R
  GGGCTCGCCA CACTACTTCT CTCCTTTCAG GCCCTACTGA GGGGGTGGGA AGGAAGGGTC
  TCTTCAGTTT TTTAGATGAG CTGGGCTACT TTGTGCTCAG AGTCTACATT CCAGATTGAT
  TAGAGTCTTA GGACATTTTT TTTCTTTTCT TTCCTTTTAT TTTTATTTTA TTTTATTTTT
  TTTATTTTAA GGAACTACAT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss45815347	mCV24288072	ABI	CRAMUS_MOUSE	f	SNP		G	A					G
ss60829333	NES16021083	PERLEGEN	MM_PANEL2	f	SNP	G		A	G	G	G	G		G	G	G	G	G	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs33739429					SNP	G	G	A	G	G	G	G	G	G	G	G	G	G	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60829333	NES16021083	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:115470738 () rs orientation: forward

Symbol	Name	Function Class
Gatc	glutamyl-tRNA amidotransferase subunit C	563 bp downstream
Rr618222	regulatory region 618222	1339 bp distal
Rr618223	regulatory region 618223	814 bp proximal
Srsf9	serine and arginine-rich splicing factor 9	within coordinates
Tssr48220	transcription start site region 48220	42 bp upstream
Tssr48221	transcription start site region 48221	179 bp upstream
Tssr52783	transcription start site region 52783	1350 bp downstream
Tssr52784	transcription start site region 52784	1389 bp downstream
Tssr52785	transcription start site region 52785	1419 bp downstream
Tssr52786	transcription start site region 52786	1545 bp downstream
Tssr52787	transcription start site region 52787	1590 bp downstream
Tssr52788	transcription start site region 52788	1800 bp downstream
Tssr52789	transcription start site region 52789	1837 bp downstream