rs33741369 SNP Detail

Summary

• ID
  rs33741369
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  125
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr5:144576678 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                                                   
  TATATACACA CATGGCACAT ACACAGAGAG AAAGAGAGAG TCAGAGAGAG ACAGACAGAC
  AGACACACAG AAAGACAAAG ACAGACACAC AGAGAGAGGC AGAGCGACGG AAGAGAAAGA
  GACACACAGA GAGAAAAATA GAAATAAAAT AAACCTTTTA AAACAATAAA TCTACTGAGA
  TTCCCTCCTA CAGTGGTGAG GTCAGGGGCT CCCCAGCCCT CCCGTACCTT CTGTTAGTCA
  CTTGAATGAT TCACAAGCTC CAGAGATTGC ATAACACCAG AGTGTGTCAT CCATCACTTT
  Y
  TGTGGTTAAC ACAAGCAGAA ATAATATCAC CGTATCATGG GGCCAGAGCT TGCGTGAGGT
  GGGCCTAAGT GCTCTGGCCA GGCAGTCCCT GGACACTGGG CCTAGCAAGG CCAAGATCCT
  TTCCCTGAGA CCATCTGTGC CTGTCCAAAA AGTGACCCTT AGTTACATAG TCACCTTTCA
  TTTGGCTTTT GTTGTGGTTT GGTTTGAGGT TTGTTTTTTG TTTTTAACTA TGCGCGTGTG
  TGTGTGTGTG TGTGTGTGTG TGTGTGTGTG TGTGTGTGTC GGTGTGTCGG TGTGTCGGTG
                                                                   
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	C57BL/6J	DBA/2J
ss45816590	mCV22812812	ABI	CRAMUS_MOUSE	f	SNP	T	C	T
SNP Consensus Information
SNP					Consensus Type	A/J	C57BL/6J	DBA/2J
rs33741369					SNP	T	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:144576678 () rs orientation: forward

Symbol	Name	Function Class
D5Dcr36	DNA Segment, Chr 5, Derry C. Roopenian 36	605 bp proximal
D5Mit43	DNA segment, Chr 5, Massachusetts Institute of Technology 43	560 bp proximal
D5Mit43.2	DNA segment, Chr 5, Massachusetts Institute of Technology 43.2	667 bp proximal
Gm71822	predicted gene, 71822	within coordinates
Rr624456	regulatory region 624456	965 bp distal
Rr624457	regulatory region 624457	1020 bp distal