rs33741568 SNP Detail

Summary

• ID
  rs33741568
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr5:97204541 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ACCTGCTCTA GGAGACAGAC
  AGCATTTTCT TTCTCTTGAG TCCAAGTGAG GGGGATTATT TCTTGTGTCT TTTTAAAGAA
  CTGGATCTGG GTTTTGTACA AAACCCTGTG AGAACATTGC TCTCTGTGCA CTCTCAGTCG
  TAATGCTGTC CCTTAAGTCT CCTGTACTTC CAGCTTGGCA GGCTGACGTT TCAACAGCTA
  Y
  GGCTGCCTGT ATTGTTTTCT TTATTAGCTT TATTGAGCTG ATATTCTGAG GTGGATACTT
  AGAAGGAAAC CAGATGACTG ATGTGGTCAT CTGTAATAAT CAACTGTGTC TGTATTTTGT
  AGAATGAATA GTAATTTAGA GATAATTTCA TTATTTGGAA TGAATTATAT TTTTCTATTA
  TAGAATAACA GATACCATTG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	C57BL/6J	DBA/2J
ss45816306	mCV25011118	ABI	CRAMUS_MOUSE	f	SNP	C	C	T	T
ss148886313	ENSMUSSNP5135414	ENSEMBL	ENSEMBL_Sanger	f	SNP		C		T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	C57BL/6J	DBA/2J
rs33741568					SNP	C	C	T	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:97204541 () rs orientation: forward

Symbol	Name	Function Class
Bmp2k	BMP2 inducible kinase	Intron
Rr399178	regulatory region 399178	661 bp downstream
Rr615014	regulatory region 615014	690 bp distal
Rr615015	regulatory region 615015	806 bp distal