rs33742298 SNP Detail

Summary

• ID
  rs33742298
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr5:116729536 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GCAGG CTAGCCATCC TGAAAGCCCA
  R
  GGAGCCCGGG AGCCTGGGGC GCTGT                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J
ss45815877	mCV24902570	ABI	CRAMUS_MOUSE	f	SNP	A	A	A	G
ss149139038	ENSMUSSNP3678226	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	A		G
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J
rs33742298					SNP	A	A	A	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:116729536 () rs orientation: forward

Symbol	Name	Function Class
Cpgi16401	CpG island 16401	within coordinates
Rr618511	regulatory region 618511	1088 bp distal
Rr618512	regulatory region 618512	330 bp proximal
Rr618513	regulatory region 618513	1797 bp proximal
Rr618514	regulatory region 618514	1831 bp proximal
Srrm4	serine/arginine repetitive matrix 4	mRNA-UTR
Tssr52867	transcription start site region 52867	within coordinates
Tssr52868	transcription start site region 52868	305 bp downstream
Tssr52869	transcription start site region 52869	334 bp downstream
Tssr52870	transcription start site region 52870	381 bp downstream