rs33742758 SNP Detail

Summary

• ID
  rs33742758
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:64697026 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AAACGTCTTT TGGTGGTTGA
  TAAGCAAAAG GGAAGTGAGT CTTGTGCTAA AGTGTTACCA AGTTGTTTTT TTTTTTTTAA
  GAAAATTTCA TTGCATTTAT GTATTTTTGT GCGTTTATGA TGGGTTTCAC AGCGTGTATG
  TGTGTGGGAT GTGGGGTGGG GAGACAGGGA CGGCACTCAG AGGATAGCTT TTCAGGAGTC
  Y
  GTTATTTCCT TCCTTTATGT GGGTTTCAGG ATGCAGCTCA GGTTCTCAGG CTAGGCAGTG
  AGTATCTTTA CTCACTGAGC TATCTCACTG GCCAAAGGTG TGTTTGTTTG TTTGTTTGTT
  TGATTTCTTT ATTTTTTATT GGTTATTTTA TTTATCTACT TTTCAAACGT TAGCCCCTTT
  CCGGGTTTCC ACTCTGAAAG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss46313604	mCV25282063	ABI	CRAMUS_MOUSE	f	SNP	T	C	C
ss136565251	ENSMUSSNP4076861	ENSEMBL	ENSEMBL_Sanger	f	SNP	T		C
ss322985862	CHEV_9_64637551	CHEVERUD	SCREENING_POP	f	SNP				T	C
SNP Consensus Information
SNP					Consensus Type	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs33742758					SNP	T	C	C	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:64697026 () rs orientation: forward

Symbol	Name	Function Class
Rr401455	regulatory region 401455	12 bp downstream
Rr681316	regulatory region 681316	within coordinates
Rr681317	regulatory region 681317	951 bp proximal
Rr681318	regulatory region 681318	1520 bp proximal
Tssr2909	transcription start site region 2909	1050 bp downstream
Tssr85622	transcription start site region 85622	87 bp downstream
Tssr85623	transcription start site region 85623	67 bp downstream
Tssr85624	transcription start site region 85624	1212 bp upstream
Tssr90157	transcription start site region 90157	1078 bp downstream