rs33743197 SNP Detail

Summary

• ID
  rs33743197
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr5:52520016 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GCTGAACTGG CTTCTAGGGG
  ACGCCACCTG AAGGAGGTTC ACTGAGCTCC AGGAGGCACG CAGAGAACAG GTTACCGAAC
  AAACTTCCCA CCTGCCAGGC CTGGCGACTG GAGGTGTCAG GGGCCATTCT GTCTCTAGCT
  GTACCACTGA TGCTCGGTTA TCTTCCTAAG TGTGTGAACC ACATGGGGCA GAAACTTGTG
  Y
  AGCTTGGAGA CTCTGGTGTG TGGTGTGGTA GGGGGCAGGT ACCCAATAAC CATTTGTCAA
  AGGAATTCAG GGGACAGACA AGCGGCAGCA AGCTGGGGAT GCTTCTCTGG GAAAGAGAGC
  CTTTTATTTC TAGAGAGTTT CTGTGATGGA CAGGAGCTCC CAACAACAAA AGAAATAAGG
  AGCCTGGGAT TGGAGGTTCC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J
ss45815984	mCV25026698	ABI	CRAMUS_MOUSE	f	SNP	T	C	C	C
ss148440006	ENSMUSSNP53079	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	C		C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J
rs33743197					SNP	T	C	C	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:52520016 () rs orientation: forward

Symbol	Name	Function Class
Rr611419	regulatory region 611419	1471 bp distal
Rr611420	regulatory region 611420	712 bp proximal
Rr611421	regulatory region 611421	1128 bp proximal
Sod3	superoxide dismutase 3, extracellular	1130 bp upstream
Tssr46168	transcription start site region 46168	1238 bp upstream
Tssr46169	transcription start site region 46169	1251 bp upstream
Tssr46170	transcription start site region 46170	1282 bp upstream