rs33743920 SNP Detail

Summary

• ID
  rs33743920
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr5:123126706 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TCAGT CCCTTCCACG CCTTTCGGCG
  Y
  TGCCTCCTCC CCACTTAAGT GTCTG                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss45816622	mCV24599796	ABI	CRAMUS_MOUSE	f	SNP	C	T	T
ss149192193	ENSMUSSNP5961601	ENSEMBL	ENSEMBL_Sanger	f	SNP	C		T
ss321670131	CHEV_5_123438652	CHEVERUD	SCREENING_POP	f	SNP				C	T
SNP Consensus Information
SNP					Consensus Type	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs33743920					SNP	C	T	T	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:123126706 () rs orientation: forward

Symbol	Name	Function Class
A930024E05Rik	RIKEN cDNA A930024E05 gene	711 bp upstream
Cpgi16565	CpG island 16565	within coordinates
Cpgi16566	CpG island 16566	419 bp proximal
Gm44574	predicted gene 44574	within coordinates
Kdm2b	lysine (K)-specific demethylase 2B	within coordinates
Rr620030	regulatory region 620030	121 bp distal
Rr620031	regulatory region 620031	within coordinates
Rr620032	regulatory region 620032	446 bp proximal
Rr620033	regulatory region 620033	506 bp proximal
Rr620034	regulatory region 620034	653 bp proximal
Rr620035	regulatory region 620035	1170 bp proximal
Rr620036	regulatory region 620036	1673 bp proximal
Tssr48729	transcription start site region 48729	1031 bp downstream
Tssr48730	transcription start site region 48730	599 bp upstream
Tssr48731	transcription start site region 48731	622 bp upstream
Tssr48732	transcription start site region 48732	647 bp upstream
Tssr48733	transcription start site region 48733	705 bp upstream
Tssr48734	transcription start site region 48734	932 bp upstream
Tssr48735	transcription start site region 48735	1075 bp upstream
Tssr48736	transcription start site region 48736	1101 bp upstream
Tssr48737	transcription start site region 48737	1275 bp upstream
Tssr53168	transcription start site region 53168	1196 bp upstream
Tssr53169	transcription start site region 53169	117 bp upstream
Tssr53170	transcription start site region 53170	40 bp downstream
Tssr53171	transcription start site region 53171	400 bp downstream
Tssr53172	transcription start site region 53172	443 bp downstream
Tssr53173	transcription start site region 53173	617 bp downstream
Tssr53174	transcription start site region 53174	640 bp downstream
Tssr53175	transcription start site region 53175	1642 bp downstream
Tssr53176	transcription start site region 53176	1761 bp downstream
Tssr53177	transcription start site region 53177	1817 bp downstream
Tssr53178	transcription start site region 53178	1834 bp downstream
Tssr53179	transcription start site region 53179	1875 bp downstream
Tssr53180	transcription start site region 53180	1890 bp downstream