rs33744141 SNP Detail

Summary

• ID
  rs33744141
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr17:16983948 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGTATAGTTT TACAAATTTT
  AAAATAAAGC CTTATATTAT CTTTTCCAGA GTTATTAAAT TGTGTGTATT CTATACTGAC
  TTCCCTATGA TAAATGAAGA TAAAACTGAT TTTCCAGGAA AAAAACTATT CTGGTCAATA
  ATTTAATAAG TTGGTTCATC TTTATTCTGT CACTGGTTGT TCGGGTCTCT TGTCTGAAAA
  W
  TTTGAAAATA AATATGCACA CAGCTTTTCA AAAGAAGCAA GGTAACTACA TGTGGAAGAA
  AGCCAAAATG ACAATACAGG TTATGGAGGG AGACACTGTC AAAAGTGACC AGCATCCACA
  GAGTGAGAGT CATCCAGTGC CTTAAATGTT GTCCATGGAT GCCTTTGAAG GGACTGAAGA
  GGAGAAGGTT AGTTACTACA                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	BALB/cByJ	BTBR T<+> Itpr3/J	CAST/EiJ	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss48351289	NES12252076	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	T	T	T	T	A	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	BALB/cByJ	BTBR T<+> Itpr3/J	CAST/EiJ	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs33744141					SNP	T	T	T	T	T	T	T	T	T	T	A	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss48351289	NES12252076	PERLEGEN	MM_PANEL	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr17:16983948 () rs orientation: forward

Symbol	Name	Function Class
Rr392347	regulatory region 392347	within coordinates