rs33744142 SNP Detail

Summary

• ID
  rs33744142
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr17:16983895 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCTCGGACTT CAATCTTCAT
  GTCTTAGTAC TCTGAGATTA CAGGAATGCA CCATGTATAG TTTTACAAAT TTTAAAATAA
  AGCCTTATAT TATCTTTTCC AGAGTTATTA AATTGTGTGT ATTCTATACT GACTTCCCTA
  TGATAAATGA AGATAAAACT GATTTTCCAG GAAAAAAACT ATTCTGGTCA ATAATTTAAT
  R
  AGTTGGTTCA TCTTTATTCT GTCACTGGTT GTTCGGGTCT CTTGTCTGAA AATTTTGAAA
  ATAAATATGC ACACAGCTTT TCAAAAGAAG CAAGGTAACT ACATGTGGAA GAAAGCCAAA
  ATGACAATAC AGGTTATGGA GGGAGACACT GTCAAAAGTG ACCAGCATCC ACAGAGTGAG
  AGTCATCCAG TGCCTTAAAT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss48351290	NES12252075	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	A	A	A	A	A	A	G	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs33744142					SNP	A	A	A	A	A	A	A	A	A	A	A	A	G	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss48351290	NES12252075	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr17:16983895 () rs orientation: forward

Symbol	Name	Function Class
Rr392347	regulatory region 392347	within coordinates