rs33745529 SNP Detail

Summary

• ID
  rs33745529
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  125
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:165585734 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                                                   
  CAAAAAGTAG TGTCCCTTAG AGAGAGAAAA CTCCCAACAC CTTAGTTACC ATGCAAAGCG
  AAAGCTCCTT AAACATGCAG GGTTTCTCCA GCTCCCCACA GCTCCCAGCC CAGTCCTAGG
  GCAGCAGGCT CTTGTGCTCT GTGTACCTAA TACAGCCCAC TAACTCCCTG TAAATTAAGT
  TCTACTGACA CACAGCTATT CCCATGCACT TGCGTGCTGT CTGAAGTTGC TTTTGTGTTG
  CCCAAGAAGG GCTGAGGGGT TTAGTATGGT GTGTGTGTGT GTGTGTGTGT GTGTGTGTGT
  R
  TTTATGTATA GTGTGTGTGT GTGTATGTGT GTGTGTGTGT GTGTGTGTGT TGCATCCTCT
  TGTGGTCTAG AGTGTTCACT CTGAAATCAG ATGGCTCAAG TTCAAAGCCA GCCTCATCCC
  CTTAGCTGTA TCTGACAAGT TGCTTGGTCA CCGTGTGCCT TCTCAGTTTC AAAGTTGGAA
  TGTGCCCATT AACGCGTCAC AGGTATTTAG AAGGGGTCAG CTCTGTGGTA GGCAGATCTT
  ATAAAGGAAG TGAATGGCAG TGTGTCTTAC AGAACTGAGT CTTAAACCAC ATGTGGTAAT
                                                                   
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J
ss45316905	mCV22645817	ABI	CRAMUS_MOUSE	f	SNP	A	G	A	G
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J
rs33745529					SNP	A	G	A	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:165585734 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Cpgi12714	CpG island 12714			1248 bp distal
Eya2	EYA transcriptional coactivator and phosphatase 2			Intron
				Noncoding-Transcript-Variant
Rr569990	regulatory region 569990			1580 bp distal
Rr569992	regulatory region 569992			1119 bp distal
Rr569993	regulatory region 569993			1033 bp proximal