rs33746067 SNP Detail

Summary

• ID
  rs33746067
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:86763600 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        AACCT TGTTGACTAA AGAAAGAAAG
  M
  TCAAGACCAC CACCAAAAAG TTATG                                      
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	DBA/2J	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss46313377	mCV24288048	ABI	CRAMUS_MOUSE	f	SNP		C					A	A
ss61436633	NES16820190	PERLEGEN	MM_PANEL2	f	SNP	A	C	C	C	A	C		A	A	A	C	A	C	A
ss136762484	ENSMUSSNP1768287	ENSEMBL	ENSEMBL_Sanger	f	SNP		C						A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	DBA/2J	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs33746067					SNP	A	C	C	C	A	C	A	A	A	A	C	A	C	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss61436633	NES16820190	PERLEGEN	MM_PANEL	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:86763600 () rs orientation: forward

Symbol	Name	Function Class
Cpgi22106	CpG island 22106	451 bp distal
Rr684153	regulatory region 684153	1144 bp distal
Rr684154	regulatory region 684154	608 bp distal
Snap91	synaptosomal-associated protein 91	893 bp upstream
Tssr90794	transcription start site region 90794	1175 bp upstream
Tssr90795	transcription start site region 90795	1135 bp upstream
Tssr90796	transcription start site region 90796	1080 bp upstream
Tssr90797	transcription start site region 90797	1063 bp upstream
Tssr90798	transcription start site region 90798	1045 bp upstream
Tssr90799	transcription start site region 90799	888 bp upstream
Tssr90800	transcription start site region 90800	835 bp upstream