rs33746235 SNP Detail

Summary

• ID
  rs33746235
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:161113076 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGGAACTCAC TTTGTAGACC
  AGGCTGGCCT CGAACTCAGA AATCTGCCTG CCTCTGCCTC CCAAGTGCTG GGATTAAAGG
  CGTTCACCAC CACTGCCCGG CTTAAGGAAA GTTTTTTAAC TTGTATATAG GAAAACCAAT
  GGATTCTATT AGAATATTCT AATAATTAGT CTGAGTAAAT TAATGCTGGA ATATTAATGC
  Y
  CATGATGGAG ATCAGACAGC AGGCTTCTCC GTTACTCCAT AGTGTGTAAA ACAGCAACTT
  TCAGGCTGTG CCTTGCCCTG CGTGATTCCA TTCTACCAGG AAGCCTTTGG CTTTGTCTCC
  AGTGCAGACA CAGAGGAGCA ATGACGACGG CACACGTCAT GCACACAGAC ATAAGCCCCT
  GCCCACCACC AACCATGAGG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	AKR/J	BTBR T<+> Itpr3/J	CAST/EiJ	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ	WSB/EiJ
ss49523984	NES12844757	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	T	C	C	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	A/J	AKR/J	BTBR T<+> Itpr3/J	CAST/EiJ	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ	WSB/EiJ
rs33746235					SNP	C	C	C	T	C	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss49523984	NES12844757	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:161113076 () rs orientation: forward

Symbol	Name	Function Class
Rr421789	regulatory region 421789	1193 bp proximal
Rr421790	regulatory region 421790	1378 bp proximal