rs33746593 SNP Detail

Summary

• ID
  rs33746593
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:167893857 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GAGTCTCTTC TTTGCGGTAT
  GGTATGGAGG CTTGAACCCA GAGCCTCCTT CACAGACAGC CCCTGCCCCC ACTCCACCCC
  CTTCTTTTCC CTTCTGAGGC CAGGATCTCA CCTGGCTGCT CAGACCAGCC TCAAACCCTT
  AAACCTCAGG CTCACTCAGT TCTGGTTGAG CTTGAACTTG TGCTTCTGCC TCAGCCTCTG
  R
  ACTAGCAAAT GTCAGGAGTT CCAGGACTAT AGTGCCAAGC TCCACCCCCA CTTTATATTC
  TTTACACAGG GGTCTTAAAC CAGGCAAGGC AATTAGCACA TCTAATCCCA GCACACATGA
  AGCTAGGCAG GAAGACCAGA GTTCAAGACC AGCGTGGGCT ACATAAGACC CTGCTTCTAA
  ATCAGAAAAG CTGAGGGTGG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J
ss45316726	mCV22943477	ABI	CRAMUS_MOUSE	f	SNP	A	G	G	G
ss148265681	ENSMUSSNP2881811	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	G		G
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J
rs33746593					SNP	A	G	G	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:167893857 () rs orientation: forward

Symbol	Name	Function Class
Cpgi12760	CpG island 12760	1027 bp distal
Gm57439	predicted gene, 57439	1510 bp upstream
Rr406967	regulatory region 406967	1067 bp distal
Rr570860	regulatory region 570860	1581 bp distal
Rr570861	regulatory region 570861	1724 bp distal
Rr570862	regulatory region 570862	1022 bp distal
Rr570863	regulatory region 570863	840 bp proximal
Rr570864	regulatory region 570864	937 bp proximal
Tssr27820	transcription start site region 27820	1856 bp upstream
Tssr27821	transcription start site region 27821	1573 bp upstream
Tssr27822	transcription start site region 27822	1537 bp upstream
Tssr27823	transcription start site region 27823	1509 bp upstream
Tssr27824	transcription start site region 27824	9 bp downstream