rs33747204 SNP Detail

Summary

• ID
  rs33747204
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr10:30475941 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTCTCGAGTC CTTCCTTCAT
  TTTACTTTCT ATTAAAAAAC AATCTAATTC TGCCTCTTTA CTTTTAAACT GTTTAATTCC
  TCTTCCAAGC TATAGTGTCC TCAAGTCTGT TTTCTCTGGT CCATCAGCCT ACTTCTCTCT
  CTTTACCACT CTGCTACGTA GCTGGTGACG AGCAACGAAC AACAGTTTAT ACTTCTAATG
  K
  ACTTATTTCC TTGGCCCCGG TAACTAATAC TGTAGCTCAT ATGTCACCCC CACCTTGAAA
  GGCAACATCC TTCATTCATC AATGGACAAA GATTCCCTTT TTAAAAGGCC CCCATACTTT
  AAAGGTTCCC ACTAAGAACC CTCCATCATT GCACTTCACA AAGTTATGGC TATGCTCTCG
  CGTCCGCTAG TCCTGAGCCT                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss47836735	NES11966038	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	T	G	G	G	T	G	G	T	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs33747204					SNP	G	G	G	G	G	G	T	G	G	G	T	G	G	T	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47836735	NES11966038	PERLEGEN	MM_PANEL	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr10:30475941 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Cpgi1419	CpG island 1419			202 bp proximal
Rr368960	regulatory region 368960			763 bp upstream
Rr429537	regulatory region 429537			within coordinates
Rr429538	regulatory region 429538			794 bp proximal
Trmt11	tRNA methyltransferase 11			Intron
				mRNA-UTR
Tssr97172	transcription start site region 97172			717 bp downstream