rs33747244 SNP Detail

Summary

• ID
  rs33747244
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:102491492 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        AAAATATATT ATTTAGGGGC AGTCATCAGT CAGCTGGAAA
  CATTCTGGAA ACCCTTCTTT TCTCCCAGAA GCCTTTGCAG AGTCTCTGTT CAGTAGAATG
  R
  ACCTGCTGGG CTCTCTGGTC GAGATAAAGA GGCAGAAATA GCCTTGGAGA GGGCTTTCTG
  AAGGCTGTCT CAGTGGAGAC TTTTAGTACT AAATTGTTC                       
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J
ss45317002	mCV23733818	ABI	CRAMUS_MOUSE	f	SNP	A	G	G	A
ss147119827	ENSMUSSNP2895292	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	G		A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J
rs33747244					SNP	A	G	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:102491492 () rs orientation: forward

Symbol	Name	Function Class
Cpgi11978	CpG island 11978	1392 bp distal
Gm57687	predicted gene, 57687	within coordinates
Rr561715	regulatory region 561715	1856 bp distal
Rr561716	regulatory region 561716	1071 bp distal
Rr561717	regulatory region 561717	1150 bp proximal
Rr561718	regulatory region 561718	1725 bp proximal
Slc1a2	solute carrier family 1 (glial high affinity glutamate transporter), member 2	within coordinates
Tssr19110	transcription start site region 19110	1915 bp downstream