rs33747563 SNP Detail

Summary

• ID
  rs33747563
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:78075930 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CAGAT AAACCCAGGC ATAATCATTC
  S
  AGACAGCACA GTCCTACTTC TTTGT                                      
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	C3H/HeJ	CAST/EiJ	DBA/2J	KK/HlJ	LG/J	PWD/PhJ	SM/J	WSB/EiJ
ss46313666	mCV23623346	ABI	CRAMUS_MOUSE	f	SNP	G	G	C
ss61428141	NES16805425	PERLEGEN	MM_PANEL2	f	SNP	G		C	C	C	C	G	C	C		G		G
ss136664214	ENSMUSSNP6570715	ENSEMBL	ENSEMBL_Sanger	f	SNP		G	C
ss323015486	CHEV_9_78016455	CHEVERUD	SCREENING_POP	f	SNP										C		G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	C3H/HeJ	CAST/EiJ	DBA/2J	KK/HlJ	LG/J	PWD/PhJ	SM/J	WSB/EiJ
rs33747563					SNP	G	G	C	C	C	C	G	C	C	C	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss61428141	NES16805425	PERLEGEN	MM_PANEL	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:78075930 () rs orientation: forward

Symbol	Name	Function Class
Cilk1	ciliogenesis associated kinase 1	within coordinates
Tssr86264	transcription start site region 86264	1300 bp downstream
Tssr86265	transcription start site region 86265	182 bp upstream