rs33747794 SNP Detail

Summary

• ID
  rs33747794
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  132
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:18069226 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                                                   
  ACTGTGAAGT TAGCGCGGCC AACTGCAGGA AGCCATGCTT CATTACACCC TTCATGGAAG
  CTGGCACCCT CTCCCAACCA TTGTTACCCG CGGGCCAGTT CTCGAGGCAC AGGCCTTCAG
  GTAGGTTCCC GGCGCCACGA GACGCCCCCG GGGGCGCCTC TCAGCGACCC CGGCCCCCAC
  CGCACCCCGC CCCGCCGCGG CCTCTTCCTC ATGCGCGCCC GGGGCCCGCG AGGCGACGGC
  CGCCCAACGT CCCGGCCCTC GTGCGCCCCA GAGCCCTCCG GTAGACTCAC TCCGGCCGCG
  M
  TGAGCAGCCG ACTCCGCTCG TCCCCCACCT CCGCACACCT CGGCGCCGCC GAGCGGTGCG
  GGGGAGGGGA AAGCCTGGAG GTAGGCAGGG GCCAGGGGAC GCGGCGGCGC GCACGCAGGC
  CTCGCCTCTC TGGGCCGCCT CCCTCACGCC GGCCGCAGGG CGGGCCGACG CGTACGCCGG
  GTGACGCTCG GAGGAGGAAG CGCAGCCCCT TCCCCTCCCT CGCCGCCCCG GGCCCAGCGG
  GAGCCCCCCA GTGCGCCTGT GCGGAGGCCT GCTTGATTAT GTGTGCCCTC CTCGGGCGGC
                                                                   
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	C57BL/6J	DBA/2J
ss45316924	mCV25136811	ABI	CRAMUS_MOUSE	f	SNP	C	C	A
ss146306443	ENSMUSSNP529627	ENSEMBL	ENSEMBL_Sanger	f	SNP			A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	C57BL/6J	DBA/2J
rs33747794					SNP	C	C	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:18069226 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
1810059C17Rik	RIKEN cDNA 1810059C17 gene			within coordinates
Cpgi11235	CpG island 11235			within coordinates
Mllt10	myeloid/lymphoid or mixed-lineage leukemia; translocated to, 10			Intron
				mRNA-UTR
				Noncoding-Transcript-Variant
				Noncoding-Transcript-Variant
Rr552295	regulatory region 552295			within coordinates
Rr552296	regulatory region 552296			40 bp proximal
Rr552297	regulatory region 552297			170 bp proximal
Rr552298	regulatory region 552298			283 bp proximal
Tssr16361	transcription start site region 16361			502 bp downstream
Tssr16362	transcription start site region 16362			85 bp downstream
Tssr16363	transcription start site region 16363			67 bp downstream
Tssr16364	transcription start site region 16364			7 bp downstream
Tssr16365	transcription start site region 16365			1 bp upstream
Tssr16366	transcription start site region 16366			149 bp upstream
Tssr16367	transcription start site region 16367			230 bp upstream
Tssr16368	transcription start site region 16368			295 bp upstream
Tssr16369	transcription start site region 16369			377 bp upstream