rs33748080 SNP Detail

Summary

• ID
  rs33748080
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr10:30477018 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GAGTGAGATC CTGGTGTTCC
  CACCGTCTGT GGCTACCCTA GCACGCTCCC CTTGTGAGAT GCATTGTTTT AAGAGGCAGG
  CTGCAGTGAT CCCGCGCAGT TCCCCAGGGA TACTCCACTT GGAGTGTTCT TCTGACTCCT
  CCCTCTGTTC TTCAGCTCAA AACTGGACCA AAACTTCACT GTTAAGTGTA GACTCTTAAT
  M
  GTTCGAGATT CAGCCTCACC TGCTTGAACA CTGAGTGTAC TTTTAGTGAT TTTGCAAAAA
  TTTTTCAAGA GCTGTCAAGG ACCCATCTCG GGTTGCTCTG TATGGAAACA AACAAACAAA
  CAAAAGCCTT CCTCAGACTT GCACTCCGTA ATTATGCTAT GTTGTTCCAG GCACACAGTA
  AATCCACAGC CAGTGGTAGA                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss47836751	NES11966048	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	A	C	C	C	C	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs33748080					SNP	C	C	C	C	C	C	A	C	C	C	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47836751	NES11966048	PERLEGEN	MM_PANEL	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr10:30477018 () rs orientation: forward

Symbol	Name	Function Class
Cpgi1419	CpG island 1419	63 bp distal
Rr368960	regulatory region 368960	205 bp downstream
Rr429537	regulatory region 429537	284 bp distal
Rr429538	regulatory region 429538	within coordinates
Trmt11	tRNA methyltransferase 11	mRNA-UTR
Tssr97172	transcription start site region 97172	321 bp upstream