rs33748082 SNP Detail

Summary

• ID
  rs33748082
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr10:30477795 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AATAGCTATA AGTACTAGGT
  GTTACAATAT TCAAACTTCA ACGTATACTC TATTGCATGG GACCAATAAA TAGCATTGGG
  AAATGTTTTT TGTTGTTTTA AATGAGAATT TCTGCTTTTT TTTTTTAAAG AGAGATTTGC
  CTTTGTTAGT GTTGTTAAAA ATCCTTTCAC TGAGGACAAT GTAAGCAACA GCAACCATGT
  Y
  TACCAAAATC CCAAGAACAA AACAAGGCAC ATTATCACCA AAGTTCACTC CAATGAGCAA
  TGAGTTTATT GGGTTTCCTT CTAGAGAATC GATGAGGACT CACTCACCTG GCTATGGGCA
  CTCCTACCCT AACAGGATAC ACCTGAAAAG CTTTACCCAG CAGTGAGATG GGCCAAGGAG
  ATGGATAGAC GTTGACTTCC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss47836753	NES11966049	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	T	C	C	C	C	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs33748082					SNP	C	C	C	C	C	C	T	C	C	C	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47836753	NES11966049	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr10:30477795 () rs orientation: forward

Symbol	Name	Function Class
Cpgi1419	CpG island 1419	840 bp distal
Gm20300	predicted gene, 20300	1396 bp downstream
Hint3	histidine triad nucleotide binding protein 3	1396 bp downstream
Rr368960	regulatory region 368960	982 bp downstream
Rr429537	regulatory region 429537	1061 bp distal
Rr429538	regulatory region 429538	560 bp distal
Trmt11	tRNA methyltransferase 11	1050 bp upstream
Tssr97172	transcription start site region 97172	1098 bp upstream