rs33748350 SNP Detail

Summary

• ID
  rs33748350
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:99758827 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        GAATATATCA AACTCAGGCC AAAACCAAAA TAAACTTTTC
  GCGCCAGAAC ATCTACGGTG CTTTGGTATC ATTCTCCCAG GTTGGCTTTA GGCGGCGCCT
  M
  CACCTGTAAT CCAGGACGCT CTGCGGAGCA GTTCTGGGTC CCTGGGGGTC GGAGCCAAGA
  GCTTTGAGCC GAGACCAGGA TGCTTCATGC GGGCTTCGC                       
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J
ss46314235	mCV22284225	ABI	CRAMUS_MOUSE	f	SNP	A	A	C
ss136852108	ENSMUSSNP4615722	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J
rs33748350					SNP	A	A	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:99758827 () rs orientation: forward

Symbol	Name	Function Class
Cpgi22205	CpG island 22205	304 bp distal
Gm16004	predicted gene 16004	within coordinates
Gm67910	predicted gene, 67910	50 bp downstream
Rr685463	regulatory region 685463	1046 bp distal
Rr685464	regulatory region 685464	615 bp distal
Rr685465	regulatory region 685465	114 bp distal
Rr685466	regulatory region 685466	1009 bp proximal
Sox14	SRY (sex determining region Y)-box 14	604 bp upstream
Tssr91083	transcription start site region 91083	581 bp upstream
Tssr91084	transcription start site region 91084	562 bp upstream