rs33748966 SNP Detail

Summary

• ID
  rs33748966
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr10:30478397 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ATAATTAAAA GGTAAGTTAT
  TTTAGTTGTT AGAATAATAC TCAAAAATGT AAGAACACTT TTACAAACGA CTACATAAAT
  GAAAATTCAG TAAAATATTA AGTTAATTTT TGTTTAAACT AGTTTTCATA TATTCCAGAC
  TGACCTAAAA CTGTCAAGCT CTTCACCCCT CCCCCTCCTG AGAGTTGAAA TTATAGGCCT
  R
  TGCACAACAC CTAGTTTAGG ATTTCTCTTC ATTTGCATTT ATGAAACTTG ACTAGAAAAC
  TAACACAGAT ATGCAGTTAT TGCTGGACTT TATAACTGAC CATATCTTTT TTTTTTTTTT
  TTAAAGATTT ATTTATTATA TGTAAGTACA CTGTAGCTGT CTTCAGACAC TCCAGAAGAG
  GGAGTCAGAT CTCGTTACGG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss47836757	NES11966056	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	G	A	A	A	G	A	A	G	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs33748966					SNP	A	A	A	A	A	G	A	A	A	G	A	A	G	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47836757	NES11966056	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr10:30478397 () rs orientation: forward

Symbol	Name	Function Class
Cpgi1419	CpG island 1419	1442 bp distal
Gm20300	predicted gene, 20300	794 bp downstream
Hint3	histidine triad nucleotide binding protein 3	794 bp downstream
Rr368960	regulatory region 368960	1584 bp downstream
Rr429537	regulatory region 429537	1663 bp distal
Rr429538	regulatory region 429538	1162 bp distal
Trmt11	tRNA methyltransferase 11	1652 bp upstream
Tssr97172	transcription start site region 97172	1700 bp upstream