rs33749408 SNP Detail

Summary

• ID
  rs33749408
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  125
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:96140609 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                                                   
  CTTGGCAGTT GGAAATTTTA TTTTCATTGC CTTATTTGTA ATATTATTGC AATAAAAGTG
  TATTAATTTT GGTAGCTAAT CTTATGGTTA TCTGACATTA CAAAAAGTAA ACTTGGAAAT
  GAACTTTAAA AGGTCATCTT TTGTTAAATT TCCTGTGTTG GAAAATTGAG TAAAATGATT
  AGGTATGTAA GTAACTTTAA TTAATCATTT AAAAAAAAGG TCAACATAAT TTTTGCTCTC
  CTGAAAAAAT GGAAAAAGGT ACTTAACCCT GGATGTAAAA AACTAACCCA AAACGTTTAA
  R
  ACTAACTGTG GGAAAGTGGG AGGGCGAAGA GCACAGCTAA GCTGCTCTTT GTTGATATCA
  GAAACCAGCC TGTCATTCAC TTTGGCGTTG AAGCATGGCC TATCTCAGGG GGCAGGACCA
  GGACTCTTCC CTCCCACAAG GGCTGGGCAG TTTCTGCAAG CTCAGAGAGC TCTGAGCAGT
  TTTTCAGGAG TTTCTCCTCC CCTTTTACTG GGAAATTCAT GGTGCATTTG CTCTGCTTTC
  AAAATGCGGT AAGGTCTTCT GCTTTCTGAC TGACTGCCTT GGAGCCAGCA GATAGTCGGA
                                                                   
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	C57BL/6J	DBA/2J
ss46313781	mCV23540970	ABI	CRAMUS_MOUSE	f	SNP	A	G
SNP Consensus Information
SNP					Consensus Type	C57BL/6J	DBA/2J
rs33749408					SNP	A	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:96140609 () rs orientation: forward

Symbol	Name	Function Class
Tfdp2	transcription factor Dp 2	within coordinates
Tssr2975	transcription start site region 2975	664 bp upstream
Tssr86589	transcription start site region 86589	141 bp upstream
Tssr86590	transcription start site region 86590	158 bp upstream
Tssr86591	transcription start site region 86591	172 bp upstream
Tssr86592	transcription start site region 86592	235 bp upstream
Tssr86593	transcription start site region 86593	250 bp upstream
Tssr86594	transcription start site region 86594	452 bp upstream
Tssr86595	transcription start site region 86595	690 bp upstream
Tssr86596	transcription start site region 86596	714 bp upstream