rs33750111 SNP Detail

Summary

• ID
  rs33750111
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:41494925 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        ACTCA CATCATACAT GCAAAAGACC
  R
  GCAGACATTT GGTGCTTTTG AAGGC                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss46314338	mCV23037809	ABI	CRAMUS_MOUSE	f	SNP	A	A					G		A
ss61386145	NES16764679	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A		G	A	A	A		G	A	A	G		A
ss136358684	ENSMUSSNP288083	ENSEMBL	ENSEMBL_Sanger	f	SNP		A							A
ss322927333	CHEV_9_41391712	CHEVERUD	SCREENING_POP	f	SNP												A					A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs33750111					SNP	A	A	A	A	A	A	G	G	A	A	A	A	G	A	A	G	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss61386145	NES16764679	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:41494925 () rs orientation: forward

Symbol	Name	Function Class
Gm28119	predicted gene 28119	777 bp downstream
Gm69589	predicted gene, 69589	within coordinates
Mir100hg	Mir100 Mirlet7a-2 Mir125b-1 cluster host gene	within coordinates
Mir125b-1	microRNA 125b-1	1627 bp downstream
Rr677065	regulatory region 677065	1617 bp distal
Rr677066	regulatory region 677066	1490 bp distal
Rr677067	regulatory region 677067	909 bp distal
Rr677068	regulatory region 677068	within coordinates
Rr677069	regulatory region 677069	1159 bp proximal
Tssr84527	transcription start site region 84527	1625 bp downstream
Tssr84528	transcription start site region 84528	587 bp downstream
Tssr84529	transcription start site region 84529	782 bp upstream
Tssr84530	transcription start site region 84530	1762 bp upstream