rs33751991 SNP Detail

Summary

• ID
  rs33751991
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  125
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr1:160904171 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        GATCCTGTCC CTCCTCCCAA ATGGTTTTCC TTTCTGCTTT
  CACTTTATTA CCCTACTTTA TGATCTCGTC CTTCTGCTTA CGCTCCCTTT CTGTTTTCAT
  S
  ACCACATGCA CATATACACA CATCTAAGTT CTGAATATTA GAGAAAACAT AGGCACTTAT
  CTGGCTTACT TTACCTAACA TCTAAGAGTA TCCATTTTCT                      
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	AKR/J	BTBR T<+> Itpr3/J	CAST/EiJ	FVB/NJ	KK/HlJ	NOD/ShiLtJ	WSB/EiJ
ss49524744	NES12817427	PERLEGEN	MM_PANEL2	f	SNP	G	G	C	G	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	A/J	AKR/J	BTBR T<+> Itpr3/J	CAST/EiJ	FVB/NJ	KK/HlJ	NOD/ShiLtJ	WSB/EiJ
rs33751991					SNP	G	G	C	G	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss49524744	NES12817427	PERLEGEN	MM_PANEL	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:160904171 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Cenpl	centromere protein L			Intron
				Noncoding-Transcript-Variant
Rr396459	regulatory region 396459			14 bp downstream
Rr421754	regulatory region 421754			within coordinates