rs33751993 SNP Detail

Summary

• ID
  rs33751993
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr1:160903393 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGAACTGAGA TGACATGTGT
  GCACCTATGT GATTTCCATG TGTATAGTGT TTTGCCTGCA TGCATATATG TATACCACAT
  GTGTGCCTGA GGAGCTCAGA TGAGGTATTC CCTAGAATTC GTGTGACATG ATTGTGAACC
  ATCTGCTGAG ACCCAGACCC TGGTCCTCTG CCGTTTCTCC ACGCCCTCCA AGATATTTTA
  Y
  ATAAAGATAG AAATGTCTAG TTTGGTGCTT TTTATTTTTA TAATTTTCCT GTAGATTTAA
  TAAGATAAAG TATGCAACCA TTTCACTGAC TGCTGTAGCT ATGACAAACA TTGTTCTCAA
  ATCTCTCTCT CTCTCTCTCT CACACACACA CACACACACA CACACACACA CACACACACA
  CACACCTTTG TTCTAAATGA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	AKR/J	CAST/EiJ	NOD/ShiLtJ	WSB/EiJ
ss49524748	NES12817500	PERLEGEN	MM_PANEL2	f	SNP	T	C	T	T
SNP Consensus Information
SNP					Consensus Type	AKR/J	CAST/EiJ	NOD/ShiLtJ	WSB/EiJ
rs33751993					SNP	T	C	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss49524748	NES12817500	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:160903393 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Cenpl	centromere protein L			Intron
				Noncoding-Transcript-Variant
Rr396459	regulatory region 396459			464 bp upstream
Rr421754	regulatory region 421754			411 bp proximal