rs33752562 SNP Detail

Summary

• ID
  rs33752562
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:64086173 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        ATCCT AGAATTATCA TCGTTTCCTC
  W
  TGCCTTGATG TTAAAACTGC TAGCA                                      
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J
ss46315017	mCV24724781	ABI	CRAMUS_MOUSE	f	SNP	T	T	T	A
ss136560656	ENSMUSSNP5610427	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	T		A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J
rs33752562					SNP	T	T	T	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:64086173 () rs orientation: forward

Symbol	Name	Function Class
Cpgi21924	CpG island 21924	285 bp proximal
Gm22455	predicted gene, 22455	1698 bp downstream
Rpl4	ribosomal protein L4	225 bp downstream
Rr368801	regulatory region 368801	362 bp upstream
Rr681196	regulatory region 681196	within coordinates
Rr681197	regulatory region 681197	459 bp proximal
Rr681198	regulatory region 681198	593 bp proximal
Snapc5	small nuclear RNA activating complex, polypeptide 5	383 bp upstream
Tssr85600	transcription start site region 85600	1873 bp downstream
Tssr85601	transcription start site region 85601	1493 bp downstream
Tssr85602	transcription start site region 85602	1439 bp downstream
Tssr85603	transcription start site region 85603	1153 bp downstream
Tssr85604	transcription start site region 85604	1111 bp downstream
Tssr85605	transcription start site region 85605	535 bp downstream
Tssr85606	transcription start site region 85606	475 bp downstream
Tssr85607	transcription start site region 85607	380 bp upstream
Tssr85608	transcription start site region 85608	398 bp upstream
Tssr90132	transcription start site region 90132	1080 bp upstream
Tssr90133	transcription start site region 90133	512 bp upstream
Tssr90134	transcription start site region 90134	442 bp upstream