rs33752868 SNP Detail

Summary

• ID
  rs33752868
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr10:30474459 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TAACATAGAC TTCTGAGATT
  TTTATAGTCC TAACCATGGT TATTAGGTCA TAGACCTGAG AGATTTTATA CATGAGCTAC
  AAAAGGATTT CATCAGAAAC TGTTCTGTCC TGATTTAGGG AAGTAAAGAA TTTTTTTTTA
  CAGATGCTAC AGATTAGTAA ATAAAATAGT CAACAATAAA AAAATAGAAT GAATTATTAA
  M
  CATGATTTGA AGATGTTTGA AAAAGAAATA ATTAGCTAGG GAGCATAATT GTGAGTTTGA
  AACGTGTAAG GACATGGCTA ACCTTTCAGT GTAGTAATAA AACTAGAAAG AGTTAACACC
  AGTTTTGTTT GTTTTTAAGA TTGTCATATA ACCAAGGCTG CCTTGACTTC TCGATTCACC
  TGCCTCCACT TCACAAACGC                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss47836721	NES11966197	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	A	A	A	A	C	A	A	C	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs33752868					SNP	A	A	A	A	A	A	A	A	A	A	C	A	A	C	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47836721	NES11966197	PERLEGEN	MM_PANEL	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr10:30474459 () rs orientation: forward

Symbol	Name	Function Class
Cpgi1419	CpG island 1419	1684 bp proximal
Rr429537	regulatory region 429537	1374 bp proximal
Trmt11	tRNA methyltransferase 11	Intron