rs33752870 SNP Detail

Summary

• ID
  rs33752870
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr10:30474822 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTGACTTCTC GATTCACCTG
  CCTCCACTTC ACAAACGCTG GGATTACCGG AGTGTACCAC TATACCTGCC CAGAGTGAAC
  ATTTTAAATG TAACATGCAT GTCATGAGGA AATTTGATCA AATGCATACA TCCTTCAGGC
  AACCTCTTTG TTCTGATAAA CACAGATTGA CTGTAAAAAT ACCTTGCTTT GTCACACTGA
  M
  CAATTGCTTA AATAAGATAT AGCAAGTGAA CTCTATCCCT CCACATTGGC CCTATGAGGA
  AGTAACTAAG AAGATAAGTG TCCCCGATGC TGGTTGCCAA CACTCTCCTT CCCTCCCTTC
  CAGAAGGTCT TTACACCATG ACCATGGCCA TCAGGAGGGA GTGATACCAT CACTTCCTAC
  TCCAAATCAC AAACAATGGG                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss47836723	NES11966141	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	A	C	C	C	C	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs33752870					SNP	C	C	C	C	C	C	A	C	C	C	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47836723	NES11966141	PERLEGEN	MM_PANEL	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr10:30474822 () rs orientation: forward

Symbol	Name	Function Class
Cpgi1419	CpG island 1419	1321 bp proximal
Rr368960	regulatory region 368960	1882 bp upstream
Rr429537	regulatory region 429537	1011 bp proximal
Rr429538	regulatory region 429538	1913 bp proximal
Trmt11	tRNA methyltransferase 11	Intron
Tssr97172	transcription start site region 97172	1836 bp downstream