rs33753085 SNP Detail

Summary

• ID
  rs33753085
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:106765121 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTGGTGCCAC TGGGTCCAAA
  TTTCTGCTGT AGGTGTCTGG GCGGACAGGA GGCTGGGAAG GTGGGGCTGC TGAGCCAAGG
  GTAAAGAGCA GGTAATGCCA TTATCACTTC TTGCCAAGTT GACAGACTGC TGGCCAGTGT
  TCTGACCACA TCCAGGAGAT GAGGTGAAGT ACCGGCAAGA GTACTCAAAG GCCCCTAGGG
  Y
  TTATGCTCTC CACAGACGGT TGCTGGATCA TTGATGCATC TGTAGGATGT CGAAGAACGC
  ACCCAGCTCT TCCCTCCTCC CATAAGCAGA AAGCAACCAG CAGGAGGAGA AAGTGCAGGA
  GGAACTTGGA AGAAACAGCA GAGGGCTTCA TGTAAGGCCC TGCGAATGCA AAGTGAATTT
  GGGGACCACA CAAGAAGATA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J
ss46315286	mCV22322725	ABI	CRAMUS_MOUSE	f	SNP	T	T	T	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J
rs33753085					SNP	T	T	T	C	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:106765121 () rs orientation: forward

Symbol	Name	Function Class
Cpgi22277	CpG island 22277	245 bp distal
Manf	mesencephalic astrocyte-derived neurotrophic factor	831 bp downstream
Rbm15b	RNA binding motif protein 15B	847 bp upstream
Rr401656	regulatory region 401656	444 bp downstream
Rr686406	regulatory region 686406	631 bp distal
Rr686407	regulatory region 686407	4 bp distal
Rr686408	regulatory region 686408	93 bp proximal
Tssr86941	transcription start site region 86941	1485 bp downstream
Tssr91351	transcription start site region 91351	828 bp upstream
Tssr91352	transcription start site region 91352	810 bp upstream