rs33753115 SNP Detail

Summary

• ID
  rs33753115
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:119184775 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CCCAC CTGCCTTATT CTGAGCTCTT
  Y
  TTTTCACATC TGACTTACCC ACTTG                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss46315186	mCV23287575	ABI	CRAMUS_MOUSE	f	SNP		C	T					C		T
ss50800717	NES14205155	PERLEGEN	MM_PANEL2	f	SNP	C		T	T	T	T	T		T	T	T	C		T	C	T		T
ss137046519	ENSMUSSNP6521010	ENSEMBL	ENSEMBL_Sanger	f	SNP		C	T
ss323219007	CHEV_9_119264827	CHEVERUD	SCREENING_POP	f	SNP													T				C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs33753115					SNP	C	C	T	T	T	T	T	C	T	T	T	C	T	T	C	T	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss50800717	NES14205155	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:119184775 () rs orientation: forward

Symbol	Name	Function Class
Cpgi22473	CpG island 22473	1634 bp proximal
Tssr87678	transcription start site region 87678	1834 bp upstream
Tssr87679	transcription start site region 87679	1865 bp upstream
Xylb	xylulokinase homolog (H. influenzae)	1672 bp upstream