rs33753836 SNP Detail

Summary

• ID
  rs33753836
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr1:160901935 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                    GGTTATTGT GAAGCCCCTG CTGTGCTCAG
  CCTTCATGGT GGTCTCGGAA GTCTCCTTTG TAACGTGCAT ATTACATTAT TTGACTTATT
  CTAGAGTTCA TACTGAAAGG TTTCTTGTAT TGATATTTCT TTTCACAATA AGAGAATAGT
  R
  GCTAAGATAA GAAACGAGTA TGATGTAGAA AAGGTGGAGA GTAGAAAAGA GAGAGAGTAA
  GAATGTGCAT GTAAGAGAAC AATGTGCATG AATTAACttt ttatatattt tttttatatt
  tttttttCTT CTTGTTCCGG CCTCGCTATC                                 
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	AKR/J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	NOD/ShiLtJ	SM/J	WSB/EiJ
ss49524752	NES12817671	PERLEGEN	MM_PANEL2	f	SNP	A	A	G		A	A		A		A
ss145905415	ENSMUSSNP4031934	ENSEMBL	ENSEMBL_Sanger	f	SNP	A			G
ss320080213	CHEV_1_163004496	CHEVERUD	SCREENING_POP	f	SNP							A		G
SNP Consensus Information
SNP					Consensus Type	A/J	AKR/J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	NOD/ShiLtJ	SM/J	WSB/EiJ
rs33753836					SNP	A	A	G	G	A	A	A	A	G	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss49524752	NES12817671	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:160901935 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Cenpl	centromere protein L			Intron
				Noncoding-Transcript-Variant
Rr396459	regulatory region 396459			1922 bp upstream
Rr421753	regulatory region 421753			1620 bp distal
Rr421754	regulatory region 421754			1869 bp proximal