rs33755112 SNP Detail

Summary

• ID
  rs33755112
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr5:41863793 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TTTTA ACAGAGGTGA AAACTAATTA
  Y
  ACTAAACTGT CAACAAAGGC AAAAT                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J
ss45817874	mCV22767900	ABI	CRAMUS_MOUSE	f	SNP	C	T	T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J
rs33755112					SNP	C	T	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:41863793 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Gm72243	predicted gene, 72243			1786 bp upstream
Gm72274	predicted gene, 72274			671 bp upstream
Rab28	RAB28, member RAS oncogene family			Intron
				Noncoding-Transcript-Variant
Rr399068	regulatory region 399068			1641 bp upstream
Rr610697	regulatory region 610697			458 bp proximal
Rr610698	regulatory region 610698			692 bp proximal
Rr610699	regulatory region 610699			1661 bp proximal
Tssr46070	transcription start site region 46070			720 bp upstream
Tssr50838	transcription start site region 50838			462 bp downstream
Tssr50839	transcription start site region 50839			967 bp downstream
Tssr50840	transcription start site region 50840			1220 bp downstream
Tssr50841	transcription start site region 50841			1519 bp downstream
Tssr50842	transcription start site region 50842			1668 bp downstream
Tssr50843	transcription start site region 50843			1685 bp downstream