rs33755820 SNP Detail

Summary

• ID
  rs33755820
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:6166916 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTACCTGGCT GTTGCCAGGT
  AACTGTGGAG AGGAGCAGGC ACTCCTTCCC CTACATCTCA CCTCACTCCC ATAGAACATA
  TTCTTATATT TCTTTACTTT TTTGTGATCA CAACAGGGAC TGCAAAGCTG TGCTTATTTT
  TAAGTTTGTG TGGTGGCTAT ATGTGTGAAG CCCAAAAGCT AACACTGAAT TTCTCTATTG
  Y
  TTGTTTTGAG CCGGTATCTC TGGCTGAATC ATGAGCTTTC CCTTTACACA AGTTGAAATC
  CGGGGATCTA CCTGTTTGCG TTACACAGCA CTGGAGCTTC AAATGCATAC CACAGTGTGC
  ACAAGTGTGA CACAAGTGTG ATGTGTGTCT TCAGGTACTT CGCTGACTGT ACCATCGCCT
  GTGAGCCTAC TTTCTATGTT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J
ss46314860	mCV22333224	ABI	CRAMUS_MOUSE	f	SNP	C	T	T	T
ss136187897	ENSMUSSNP1510096	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	T		T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J
rs33755820					SNP	C	T	T	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:6166916 () rs orientation: forward

Symbol	Name	Function Class
Cpgi21338	CpG island 21338	1484 bp proximal
Pdgfd	platelet-derived growth factor, D polypeptide	1668 bp upstream
Tssr2757	transcription start site region 2757	1762 bp upstream
Tssr83664	transcription start site region 83664	1533 bp upstream
Tssr83665	transcription start site region 83665	1554 bp upstream
Tssr83666	transcription start site region 83666	1637 bp upstream
Tssr83667	transcription start site region 83667	1654 bp upstream
Tssr83668	transcription start site region 83668	1685 bp upstream
Tssr83669	transcription start site region 83669	1722 bp upstream