rs33756359 SNP Detail

Summary

• ID
  rs33756359
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr5:112426384 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        ACTGA AGATGACCTT TAGCCTCTGT
  Y
  CCTCCTGCCT CCACTTCCTG AGTGC                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	C57BL/6J	DBA/2J
ss45818743	mCV24791795	ABI	CRAMUS_MOUSE	f	SNP	T	C
ss149079823	ENSMUSSNP5047495	ENSEMBL	ENSEMBL_Sanger	f	SNP		C
SNP Consensus Information
SNP					Consensus Type	C57BL/6J	DBA/2J
rs33756359					SNP	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:112426384 () rs orientation: forward

Symbol	Name	Function Class
Cpgi16258	CpG island 16258	1223 bp distal
D5Mit94	DNA segment, Chr 5, Massachusetts Institute of Technology 94	712 bp distal
D5Mit94.1	DNA segment, Chr 5, Massachusetts Institute of Technology 94.1	621 bp distal
Rr124048	regulatory region 124048	within coordinates
Rr124049	regulatory region 124049	416 bp proximal
Rr399260	regulatory region 399260	1942 bp downstream
Tpst2	protein-tyrosine sulfotransferase 2	within coordinates
Tssr47986	transcription start site region 47986	1825 bp downstream
Tssr47987	transcription start site region 47987	1762 bp downstream
Tssr47988	transcription start site region 47988	1748 bp downstream
Tssr47989	transcription start site region 47989	1037 bp downstream