rs33757418 SNP Detail

Summary

• ID
  rs33757418
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:156976605 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        AAGAAGGGCG GGGATCGCTC CTGGCAGAAG TGACAAGTTC
  CCGAAAAGAC CCTTCTACCA AACCTCCCTG GGCCTCTACT AGGTTCGCCG CCCAGAGTGA
  R
  CCGATGGGCT TGCACTTCAC CTGTGCCCAC CTCGGGTAGC CCGTGTGTTC GCATCCCGAC
  AGGGCGCCTC CTTCTCCAGC GGCGGGTTCC CGCCAGCCG                       
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss45318308	mCV23694163	ABI	CRAMUS_MOUSE	f	SNP	A	A	A	G
ss148092945	ENSMUSSNP4507412	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	A		G
ss320584428	CHEV_2_156960421	CHEVERUD	SCREENING_POP	f	SNP					G	A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs33757418					SNP	A	A	A	G	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:156976605 () rs orientation: forward

Symbol	Name	Function Class
Cpgi12569	CpG island 12569	within coordinates
Rr397438	regulatory region 397438	361 bp upstream
Rr568443	regulatory region 568443	511 bp proximal
Samhd1	SAM domain and HD domain, 1	within coordinates
Tssr21224	transcription start site region 21224	198 bp downstream
Tssr21225	transcription start site region 21225	1116 bp upstream
Tssr27158	transcription start site region 27158	711 bp upstream
Tssr27159	transcription start site region 27159	542 bp upstream
Tssr27160	transcription start site region 27160	400 bp downstream
Tssr27161	transcription start site region 27161	427 bp downstream
Tssr27162	transcription start site region 27162	515 bp downstream