rs33758044 SNP Detail

Summary

• ID
  rs33758044
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:62318710 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ATGCTAATTC CCTAAGATAG
  TTACCTTAGG CTGTTAGGAA GGGAAAGTCG GGGAGGGACC TGCATACCAT TGCACTGAAC
  CCAGGATTGC TGCTTCCCAA GGCCTCCTCT CACCCGTCTT GCTTTTCTAC CTGTTTTATC
  CACACCTGAG TCTCTTCAAG GCTTAGTTCC TACTAGCAAC GATGCCCTGG GAAGCCTTCC
  Y
  TGATGGCAGG CATGGTGCAT TCTCTTGGGA ACACTTCGGT GACAATTCCT CCCTGCTTGG
  CACTATTAGT CTCTTGTAGG CAAAAGGCCA CCAAATCCTG TTGACTGGGA AAGTGCCCTC
  CTGACTCCTC ACCTCTGTCT GTCACCATGG AAGCCCTGGA AAGGTGGGTC ATGGTGGCAT
  GTGTCTGTAA ACCTTGTATG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	BTBR T<+> Itpr3/J	C57BL/6J	CAST/EiJ	DBA/2J	LG/J	SM/J	WSB/EiJ
ss46315446	mCV23519771	ABI	CRAMUS_MOUSE	f	SNP		T	C		C		C
ss50718991	NES14253094	PERLEGEN	MM_PANEL2	f	SNP	T			T		C				C
ss136549467	ENSMUSSNP1824135	ENSEMBL	ENSEMBL_Sanger	f	SNP		T	C				C
ss322982273	CHEV_9_62259235	CHEVERUD	SCREENING_POP	f	SNP								C	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	BTBR T<+> Itpr3/J	C57BL/6J	CAST/EiJ	DBA/2J	LG/J	SM/J	WSB/EiJ
rs33758044					SNP	T	T	C	T	C	C	C	C	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss50718991	NES14253094	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:62318710 () rs orientation: forward

Symbol	Name	Function Class
Rr196313	regulatory region 196313	1891 bp proximal
Rr201157	regulatory region 201157	691 bp proximal